useful online scientific databases and resources

 

Human Protein Atlas

Discover cell localisation and expression patterns of your favourite protein in normal and cancer cells

 

ReMap2020

integrative analysis of transcriptional regulators from DNA-binding experiments

Cancer cell line atlas

Gene expression, DNA methylation and mutation data for >1000 cancer cell lines

 

CellMarker

Manually curated database of marker genes for mouse and human cell types

CistromeDB

Database of ChIP-seq experiments for transcription factors in mouse and human cells

 

EMAP

Atlas of mouse embryonic development including gene expression patterns

KM Plotter

meta-analysis based discovery and validation of survival biomarkers of >55K genes across 21 cancer types

 

eGastrulation

3D gene expression database of gastrulating mouse embryo (~ E5.5 - E7.5)

String

database of known and predicted protein-protein interactions to do functional protein association networks

 

GOrilla

tool for identifying and visualizing enriched GO terms in ranked lists of genes.

 

Venny

Draw Venn diagrams for up to 4 lists and retreive values from intersections

 

EMAP

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Enrichr

suite of gene list enrichment analysis tools